Vibrational Motions in Ultrafast Electronic Relaxation of Pyrazine.

Ultrafast internal conversion via a conical intersection is ubiquitous in highly efficient photochemical reactions. Internal conversion from the 1ππ* to the 1nπ* state of pyrazine is the paradigm for this phenomenon; however, the relaxation occurs in such a short time (<20 fs) that the nuclear motion is difficult to observe in real time. The present study precisely measures the vibrational coherence transferred from the 1ππ* state to the 1nπ* state using time-resolved photoelectron spectroscopy with an unprecedented time resolution of 13.3 fs and reveals the key nuclear motions that drive the internal conversion.

Signatures of Conical Intersections in Extreme Ultraviolet Photoelectron Spectra of Furan Measured with 15 fs Time Resolution.

Ultrafast internal conversion of furan upon deep UV excitation at 200 nm is studied by using extreme ultraviolet time-resolved photoelectron spectroscopy with a time resolution of 15 fs. Ballistic nuclear wavepacket motion from the 1B2(ππ*) state to the ground state is fully observed using 21.7 eV probe pulses. Through the performance of a comparison with the results of electronic structure calculations at the MS(3)-CASPT2(10,10)/cc-pVTZ level of theory, the photoelectron signals from the conical intersection regions are identified.

Ultrafast Geminate Recombination Facilitated by Hydrogen-Atom Transfer in Charge Transfer Reactions from Hydroxide and Methoxide Ions.

Previous transient absorption spectroscopy (TAS) hinted at an exceptionally rapid geminate recombination process in charge transfer reactions involving OH- or OD- ions in liquid water and CH3O- ions in liquid methanol. However, a comprehensive investigation of these dynamics using TAS has been hindered by the technical challenges stemming from the ultrafast spectral shift that spans a wide wavelength range from the mid-infrared to the visible on the subpicosecond time scale. To address these challenges, we have employed ultraviolet time-resolved photoelectron spectroscopy of aqueous solutions, enabling us to observe and analyze the complete dynamics, including electron detachment, solvation, and geminate recombination. Our findings are consistent with those of Iglev et al. ( J. Phys. Chem. Lett. 2015, 6, 986-992), supporting the hypothesis that the structural diffusion of OH/OD/CH3O induced by a presolvated electron plays a pivotal role in facilitating ultrafast geminate recombination.

Ultrafast Electronic Relaxation in 6-Methyluracil and 5-Fluorouracil in Isolated and Aqueous Conditions: Substituent and Solvent Effects.

We report ultrafast extreme ultraviolet photoelectron spectroscopy of 6-methyluracil (6mUra) and 5-fluorouracil (5FUra) in the gas phase and 6mUra and 5-fluorouridine in an aqueous environment. In the gas phase, internal conversion (IC) occurs from 1ππ* to 1nπ* states in tens of femtoseconds, followed by intersystem crossing to the 3ππ* state in several picoseconds. In an aqueous solution, 6mUra undergoes IC almost exclusively to the ground state (S0) in about 100 fs, which is essentially the same process as that for unsubstituted uracil, but much faster than that for thymine (5-methyluracil). The different dynamics for C5 and C6 methylation suggest that IC from 1ππ* to S0 is facilitated by out-of-plane (OOP) motion of the C5 substituent. The slow IC for C5-substituted molecules in an aqueous environment is ascribed to the solvent reorganization that is required for this OOP motion to occur. The slow rate for 5FUrd may arise in part from an increased barrier height due to C5 fluorination.

Distortion Correction of Low-Energy Photoelectron Spectra of Liquids Using Spectroscopic Data for Solvated Electrons.

Time-resolved photoelectron spectroscopy (TRPES) enables real-time observation of ultrafast electronic dynamics in solutions. When extreme ultraviolet (EUV) probe pulses are employed, they can ionize solutes from all electronic states involved in the dynamics. However, EUV pulses also produce a strong ionization signal from a solvent that is typically 6 orders of magnitude greater than the pump-probe photoelectron signal of solutes. Alternatively, UV probe pulses enable highly sensitive and selective observation of photoexcited solutes because typical solvents such as water are transparent to UV radiation. An obstacle in such UV-TRPES measurements is spectral distortion caused by electron scattering and a yet to be identified mechanism in liquids. We have previously proposed the spectral retrieval (SR) method as an a posteriori approach to removing the distortion and overcoming this difficulty in UV-TRPES; however, its accuracy has not yet been verified by comparison with EUV-TRPES results. In the present study, we perform EUV-TRPES for charge transfer reactions in water, methanol, and ethanol, and verify SR analysis of UV-TRPES. We also estimate a previously undetermined energy-dependent intensity factor and expand the basis sets for SR analysis. The refined SR method is employed for reanalyzing the UV-TRPES data for the formation and relaxation dynamics of solvated electrons in various systems. The electron binding energy distributions for solvated electrons in liquid water, methanol, and ethanol are confirmed to be Gaussian centered at 3.78, 3.39, and 3.25 eV, respectively, in agreement with Nishitani et al. [ Sci. Adv. 2019, 5(8), eaaw6896]. An effective energy gap between the conduction band and the vacuum level at the gas-liquid interface is estimated to be 0.2 eV for liquid water and 0.1 eV for methanol and ethanol.

Ultrafast Ring Closure Reaction of Gaseous cis-Stilbene from S1(ππ*).

cis-Stilbene (cis-St) is a well-known benchmark system for cis-trans photoisomerization. cis-St also produces 4a,4b-dihydrophenanthrene (DHP) in solution with a quantum yield of less than 0.19. The ring closure reaction, however, has never been identified for gaseous cis-St, and a recent computational simulation predicted the quantum yield of DHP to be only 0.04. In the present study, we identified an ultrafast ring closure reaction of gaseous cis-St for the first time using extreme ultraviolet time-resolved photoelectron spectroscopy. Surface hopping trajectory calculations at the SA3-XMS-CASPT2(2,2) level of theory reproduce the features of the observed time-resolved photoelectron spectra and predict the cis-St:DHP:trans-St branching ratio to be 0.55:0.41:0.04, in contrast with previous estimates. The results indicate that photoexcited cis-St favors ring closure over cis-trans isomerization under the isolated condition.

Formation of Long-Lived Dark States during Electronic Relaxation of Pyrimidine Nucleobases Studied Using Extreme Ultraviolet Time-Resolved Photoelectron Spectroscopy.

Ultrafast electronic relaxation of nucleobases from 1ππ* states to the ground state (S0) is considered essential for the photostability of DNA. However, transient absorption spectroscopy (TAS) has indicated that some nucleobases in aqueous solutions create long-lived 1nπ*/3ππ* dark states from the 1ππ* states with a high quantum yield of 0.4-0.5. We investigated electronic relaxation in pyrimidine nucleobases in both aqueous solutions and the gas phase using extreme ultraviolet (EUV) time-resolved photoelectron spectroscopy. Femtosecond EUV probe pulses cause ionization from all electronic states involved in the relaxation process, providing a clear overview of the electronic dynamics. The 1nπ* quantum yields for aqueous cytidine and uracil (Ura) derivatives were found to be considerably lower (<0.07) than previous estimates reported by TAS. On the other hand, aqueous thymine (Thy) and thymidine exhibited a longer 1ππ* lifetime and a higher quantum yield (0.12-0.22) for the 1nπ* state. A similar trend was found for isolated Thy and Ura in the gas phase: the 1ππ* lifetimes are 39 and 17 fs and the quantum yield for 1nπ* are 1.0 and 0.45 for Thy and Ura, respectively. The result indicates that single methylation to the C5 position hinders the out-of-plane deformation that drives the system to the conical intersection region between 1ππ* and S0, providing a large impact on the photophysics/photochemistry of a pyrimidine nucleobase. The significant reduction of 1nπ* yield in aqueous solution is ascribed to the destabilization of the 1nπ* state induced by hydrogen bonding.

Charge Transfer Reactions from I- to Polar Protic Solvents Studied Using Ultrafast Extreme Ultraviolet Photoelectron Spectroscopy.

Charge transfer reactions from I- to solvent water, methanol, and ethanol were studied using extreme ultraviolet time-resolved photoelectron spectroscopy (EUV-TRPES). This technique eliminates spectral broadening, previously seen in UV-TRPES, caused by electron inelastic scattering in liquids, and enables clear observation of the temporal evolution of the spectral shape. The peak position, width, and intensity of the electron binding energy distribution indicate electron detachment and subsequent solvation and thermalization processes. Geminate recombination between detached electrons and iodine atoms is discussed using a diffusion equation and a global fitting analysis based on a kinetics model.

Effects of additives on reaction of nucleosides with UV light in presence of uric acid and salicylic acid.

Recently, we reported that uric acid and salicylic acid are photosensitizers of the reaction of nucleosides with UV light via radical formation and energy transfer, respectively. In the present study, effects of 45 biologically relevant compounds on nucleoside reactions photosensitized by uric acid and salicylic acid were examined. When a mixed solution of 2'-deoxycytidine, 2'-deoxyguanosine, thymidine, and 2'-deoxyadenosine with uric acid was irradiated with UV light of a wavelength longer than 300 nm, all the nucleosides decreased. The addition of antioxidants suppressed the consumption of nucleosides. When the UV reaction of nucleosides was conducted with salicylic acid, thymidine decreased almost exclusively. Several antioxidants such as ascorbates, thiols, catecholamines, trans-2-hexen-1-ol, penicillin G, and NaHSO3 enhanced the consumption of thymidine, although the other antioxidants suppressed it. The results suggest that antioxidants may be beneficial to protect against DNA damage by photosensitization via radical formation, but that several of them may be detrimental as they facilitate DNA damage by photo-sensitization via energy transfer.

Ultrafast Photoisomerization of Ethylene Studied Using Time-Resolved Extreme Ultraviolet Photoelectron Spectroscopy.

The photoisomerization of isolated ethylene (ethene) was observed in real time from the Franck-Condon region in the 1ππ* state to ground-state products using time-resolved photoelectron spectroscopy with extreme ultraviolet (EUV, 21.7 eV) probe pulses. A combination of filamentation four-wave mixing and high-order harmonic generation was employed to obtain a temporal resolution of 31 ± 2 fs. The nuclear wave packet created by a 160 nm pump pulse accesses C═C twisted geometries within 10 fs, and the population transfer from the excited to the ground state occurs within the next 20-30 fs. Formation of vibrationally highly excited ground-state molecules was observed in less than 45 fs, and they decayed with two time constants of 0.87 and >5 ps. The interpretation of the photoelectron spectra is supported by vertical ionization energies calculated using XMS-CASPT2 along geodesically interpolated reaction paths from the Franck-Condon region to the products.

Shallow and deep trap states of solvated electrons in methanol and their formation, electronic excitation, and relaxation dynamics.

We present condensed-phase first-principles molecular dynamics simulations to elucidate the presence of different electron trapping sites in liquid methanol and their roles in the formation, electronic transitions, and relaxation of solvated electrons (emet -) in methanol. Excess electrons injected into liquid methanol are most likely trapped by methyl groups, but rapidly diffuse to more stable trapping sites with dangling OH bonds. After localization at the sites with one free OH bond (1OH trapping sites), reorientation of other methanol molecules increases the OH coordination number and the trap depth, and ultimately four OH bonds become coordinated with the excess electrons under thermal conditions. The simulation identified four distinct trapping states with different OH coordination numbers. The simulation results also revealed that electronic transitions of emet - are primarily due to charge transfer between electron trapping sites (cavities) formed by OH and methyl groups, and that these transitions differ from hydrogenic electronic transitions involving aqueous solvated electrons (eaq -). Such charge transfer also explains the alkyl-chain-length dependence of the photoabsorption peak wavelength and the excited-state lifetime of solvated electrons in primary alcohols.

α-Tocopherol phosphate as a photosensitizer in the reaction of nucleosides with UV light: formation of 5,6-dihydrothymidine.

INTRODUCTION: α-Tocopherol phosphate, a natural water-soluble α-tocopherol analog, exists in biological tissues and fluids. Synthesized α-tocopherol phosphate is used as an ingredient of cosmetics. FINDINGS: When a neutral mixed solution of 2'-deoxycytidine, 2'-deoxyguanosine, thymidine, and 2'-deoxyadenosine was irradiated with UV light at wavelengths longer than 300 nm in the presence of α-tocopherol phosphate, thymidine was markedly consumed in an α-tocopherol phosphate dose-dependent manner, whereas other nucleosides only slightly decreased. Two major product peaks were detected in an HPLC chromatogram. The products were identified as diastereomers of 5,6-dihydrothymidine. The addition of radical scavengers had almost no effects on the generation of 5,6-dihydrothymidine, whereas the reactions of nucleosides other than thymidine were suppressed. Trolox, another water-soluble α-tocopherol analog, did not generate 5,6-dihydrothymidine, although all nucleosides were slightly consumed. When UV irradiation of thymidine with α-tocopherol phosphate was conducted in D2O, two deuterium atoms were added to 5 and 6 positions of thymidine with both syn and anti configurations. The ratio of syn and anti configurations alternated depending on pD of the solution. CONCLUSIONS: The results indicate that α-tocopherol phosphate is a photosensitizer of nucleosides, especially thymidine, and that it introduces two hydrogen atoms to thymidine from H2O, generating 5,6-dihydrothymidine.

Reactions of 3',5'-di-O-acetyl-2'-deoxyguansoine and 3',5'-di-O-acetyl-2'-deoxyadenosine to UV light in the presence of uric acid.

INTRODUCTION: Recently, it was revealed that uric acid is a photosensitizer of reactions of nucleosides on irradiation with UV light at wavelengths longer than 300 nm, and two products generated from 2'-deoxycytidine were identified. In the present study, UV reactions of acetylated derivatives of 2'-deoxyguansoine and 2'-deoxyadenosine were conducted and their products were identified. FINDINGS: Each reaction of 3',5'-di-O-acetyl-2'-deoxyguansoine or 3',5'-di-O-acetyl-2'-deoxyadenosine with UV light at wavelengths longer than 300 nm in the presence of uric acid generated several products. The products were separated by HPLC and identified by comparing UV and MS spectra of the products with previously reported values. The major products were spiroiminodihydantoin, imidazolone, and dehydro-iminoallantoin nucleosides for 3',5'-di-O-acetyl-2'-deoxyguansoine, and an adenine base and a formamidopyrimidine nucleoside for 3',5'-di-O-acetyl-2'-deoxyadenosine. CONCLUSIONS: If these damages caused by uric acid with sunlight occur in DNA of skin cells, mutations may arise. We should pay attention to the genotoxicity of uric acid in terms of DNA damage to dGuo and dAdo sites mediated by sunlight.

Uric Acid as a Photosensitizer in the Reaction of Deoxyribonucleosides with UV Light of Wavelength Longer than 300 nm: Identification of Products from 2'-Deoxycytidine.

DNA reacts directly with UV light with a wavelength shorter than 300 nm. Although ground surface sunlight includes little of this short-wavelength UV light due to its almost complete absorption by the atmosphere, sunlight is the primary cause of skin cancer. Photosensitization by endogenous substances must therefore be involved in skin cancer development mechanisms. Uric acid is the final metabolic product of purines in humans, and is present at relatively high concentrations in cells and fluids. When a neutral mixed solution of 2'-deoxycytidine, 2'-deoxyguanosine, thymidine, and 2'-deoxyadenosine was irradiated with UV light with a wavelength longer than 300 nm in the presence of uric acid, all the nucleosides were consumed in a uric acid dose-dependent manner. These reactions were inhibited by the addition of radical scavengers, ethanol and sodium azide. Two products from 2'-deoxycytidine were isolated and identified as N4-hydroxy-2'-deoxycytidine and N4,5-cyclic amide-2'-deoxycytidine, formed by cycloaddition of an amide group from uric acid. A 15N-labeled uric acid, uric acid-1,3-15N2, having two 14N and two 15N atoms per molecule, produced N4,5-cyclic amide-2'-deoxycytidine containing both 14N and 15N atoms from uric acid-1,3-15N2. Singlet oxygen, hydroxyl radical, peroxynitrous acid, hypochlorous acid, and hypobromous acid generated neither N4-hydroxy-2'-deoxycytidine nor N4,5-cyclic amide-2'-deoxycytidine in the presence of uric acid. These results indicate that uric acid is a photosensitizer for the reaction of nucleosides by UV light with a wavelength longer than 300 nm, and that an unidentified radical derived from uric acid with a delocalized unpaired electron may be generated.

Exploration of Gas-Liquid Interfaces for Liquid Water and Methanol Using Extreme Ultraviolet Laser Photoemission Spectroscopy.

We present a study using extreme UV (EUV) photoemission spectroscopy of the valence electronic structures of aqueous and methanol solutions using a 10 kHz EUV light source based on high-order harmonic generation and a magnetic bottle time-of-flight electron spectrometer. Two aspects of the observed spectra are highlighted in this study. One is variation of the vertical ionization energy (VIE) for liquids as a function of the solute concentration, which is closely related to surface dipoles at the gas-liquid interface. The experimental results show that the VIE of liquid water increases slightly with increasing concentrations of NaCl and NaI and decreases with NaOH. The VIE of liquid methanol was also found to change slightly with NaI. On the other hand, tetrabutylammonium iodide (TBAI) and butylamine (BA) clearly reduce the VIE for liquid water, which is attributed to the formation of an electric double layer (EDL) by segregated solutes at the gas-liquid interface. As evidence for this, when the pH of an aqueous BA solution is reduced to protonate BA, the VIE shift gradually decreases because the protonated BA moves into the bulk to suppress the influence of the EDL. We computed the surface potentials for these solutions using molecular dynamics simulations, and the results supported our interpretation of the experimental results. Another observation is the variation of the relative energy and shape of individual photoelectron bands for solvents, which is related to alteration of the structure and constituents of the first solvation shell of ionized solvent molecules. All of the solutes cause changes in the photoelectron spectra at high concentration, one of the most prominent of which is the degree of splitting of the 3a1 band for liquid water and the 7a' band for liquid methanol, which are sensitive to hydrogen bonding in the liquids. The 3a1 splitting decreases with the increasing concentration of NaI, NaCl, and NaOH, indicating that Na+ penetrates into the hydrogen-bonding network to coordinate to a nonbonding electron of a water molecule. On the other hand, TBAI and BA cause smaller changes in the 3a1 splitting. Full interpretation of these spectroscopic features awaits extensive quantum chemical calculations and is beyond the scope of this study. However, these results illustrate the strong potential of EUV laser photoemission spectroscopy of liquids for exploration of interfacial and solution chemistry.

Design and characterization of a magnetic bottle electron spectrometer for time-resolved extreme UV and X-ray photoemission spectroscopy of liquid microjets.

We describe a magnetic bottle time-of-flight electron spectrometer designed for time-resolved photoemission spectroscopy of a liquid microjet using extreme UV and X-ray radiation. The spectrometer can be easily reconfigured depending on experimental requirements and the energy range of interest. To improve the energy resolution at high electron kinetic energy, a retarding potential can be applied either via a stack of electrodes or retarding mesh grids, and a flight-tube extension can be attached to increase the flight time. A gated electron detector was developed to reject intense parasitic signal from light scattered off the surface of the cylindrically shaped liquid microjet. This detector features a two-stage multiplication with a microchannel plate plus a fast-response scintillator followed by an image-intensified photon detector. The performance of the spectrometer was tested at SPring-8 and SACLA, and time-resolved photoelectron spectra were measured for an ultrafast charge transfer to solvent reaction in an aqueous NaI solution with a 200 nm UV pump pulses from a table-top ultrafast laser and the 5.5 keV hard X-ray probe pulses from SACLA.

Ultrafast Ring-Opening Reaction of 1,3-Cyclohexadiene: Identification of Nonadiabatic Pathway via Doubly Excited State.

The photoinduced ring-opening reaction of 1,3-cyclohexadiene (CHD) to produce 1,3,5-hexatriene (HT) plays an essential role in the photobiological synthesis of vitamin D3 in the skin. This reaction follows the Woodward-Hoffmann rule, and C5-C6 bond rupture via an electronically excited state occurs with conrotatory motion of the end CH2 groups. However, it is noted that the photoexcited S1(π,π*) state of CHD is not electronically correlated with the ground state of HT, and the reaction must proceed via nonadiabatic transitions. In the present study, we have clearly observed the nonadiabatic reaction pathway via the doubly excited state of CHD using ultrafast extreme UV photoelectron spectroscopy. The results indicate that the reaction occurs in only 68 fs and creates product vibrational coherence. Extensive computational simulations support the interpretation of experimental results and provide further insights into the electronic dynamics in this paradigmatic electrocyclic ring-opening reaction.

Reactions of kynurenic acid with hypobromous acid and hypochlorous acid.

Kynurenic acid, a tryptophan metabolite, acts as antagonist or agonist of several receptors. Hypobromous acid (HOBr) and hypochlorous acid (HOCl) are generated by eosinophils and neutrophils. At inflammation sites, kynurenic acid may encounter HOBr and HOCl to generate products. When kynurenic acid was incubated with HOBr under neutral conditions, kynurenic acid generated a single product almost exclusively. This was identified as 3-bromokynurenic acid. Kynurenic acid reacted with HOCl, generating two products. The major product was identified as 3-chlorokynurenic acid with its oxidative decarboxylation product, 3-chloro-4-hydroxy-2(1H)-quinolinone as a by-product. Free amino acids suppressed the reactions of kynurenic acid with HOBr and HOCl. Taurine suppressed the HOCl reaction but not the HOBr reaction. An eosinophil peroxidase system containing H2O2, NaCl, and NaBr reacted with kynurenic acid, generating 3-bromokynurenic acid under mildly acidic conditions. Although a myeloperoxidase system containing H2O2 and NaCl reacted with kynurenic acid to generate 3-chlorokynurenic acid under mildly acidic conditions, the product was altered to 3-bromokynurenic acid by addition of NaBr to the system. These results suggest that 3-bromokynurenic acid and 3-chlorokynurenic acid may be generated from kynurenic acid at inflammation sites in humans, although their formation will be suppressed by coexistent amino acids.

Spiers Memorial Lecture: Introduction to ultrafast spectroscopy and imaging of photochemical reactions.

A brief overview is presented on ultrafast spectroscopy and imaging of photochemical reactions by highlighting several experimental studies reported in the last five years. A particular focus is placed on new experiments performed using high-order harmonic generation, X-ray free electron lasers, and relativistic electron beams. Exploration of fundamental chemical reaction dynamics using these advanced experimental methodologies is in an early stage, and exciting new research opportunities await in this rapidly expanding and advancing research field. At the same time, there is no experimental methodology that provides all aspects of the electronic and structural dynamics in a single experiment, and investigations using different methodologies with various perspectives need to be considered in a comprehensive manner.